SlackBuilds Repository

14.0 > Academic > cap3 (20091029)

CAP3: A DNA sequence assembly program.

CAP3 if the third generation of the CAP sequence assembly program. The
program has a capability to clip 5' and 3' low-quality regions of reads.
It uses base quality values in computation of overlaps between reads,
construction of multiple sequence alignments of reads, and generation
of consensus sequences. The program also uses forward-reverse constraints
to correct assembly errors and link contigs.

This just repackages the binaries provided from upstream.

If you use CAP3 in any published work, please cite:
Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program.
Genome Res., 9, 868-877.

Maintained by: Petar Petrov
Keywords: bioinformatics,alignment,sequence


Source Downloads (32bit):
cap3.linux.tar (55f57f61e588d4de06c0506cf2696c29)

Source Downloads (64bit):
cap3.linux.opteron64.tar (2d924766f6e8b5cf03bd2db81016d821)

Download SlackBuild:
cap3.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Individual Files:

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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